{
  "schema": "lgasieve.1000g-wgs-positive-exome-check.v1",
  "purpose": "External technical corroboration on two official 1000 Genomes exomes whose BRCA1 deletions were independently called from 30x WGS.",
  "clinical_validation": false,
  "reference_build_for_exome_analysis": "GRCh37",
  "pon": "E:\\Geneseeq Dropbox\\Yang Shao\\Personal\\Codexhome\\Bioinformatics\\lga_research_2026\\project\\validation_corrected\\pon.json",
  "pon_sample_count": 95,
  "sample_count": 2,
  "conservative_any_candidate": 2,
  "conservative_80pct_callable_match": 2,
  "conservative_exact_callable_match": 2,
  "conservative_reportable": 0,
  "depth_only_research_reportable": 2,
  "interpretation": "Both WGS-positive deletions were detected as family-wise-significant depth candidates. The conservative policy retained both at REVIEW because the exome slices supplied no independent breakpoint or allelic corroboration. The explicitly non-default depth-only research policy promoted one matching candidate per sample to PASS. This two-positive challenge does not estimate clinical sensitivity or specificity.",
  "samples": [
    {
      "sample": "NA18949",
      "truth": {
        "gene": "BRCA1",
        "kind": "DEL",
        "canonical_exons": [
          14,
          15
        ],
        "target_ids": [
          "BRCA1_E14",
          "BRCA1_E15"
        ],
        "grch37_event": "SI_BD_15305; 17:41221932-41227605",
        "grch38_event": "HGSV_62183/HGSV_216997; chr17:43069993-43075601"
      },
      "full_truth_target_ids": [
        "BRCA1_E14",
        "BRCA1_E15"
      ],
      "callable_truth_target_ids": [
        "BRCA1_E14",
        "BRCA1_E15"
      ],
      "uncallable_truth_target_ids": [],
      "source_bam_url": "https://1000genomes.s3.amazonaws.com/phase3/data/NA18949/exome_alignment/NA18949.mapped.ILLUMINA.bwa.JPT.exome.20121211.bam",
      "source_bai_url": "https://1000genomes.s3.amazonaws.com/phase3/data/NA18949/exome_alignment/NA18949.mapped.ILLUMINA.bwa.JPT.exome.20121211.bam.bai",
      "slice_bam": "E:\\Geneseeq Dropbox\\Yang Shao\\Personal\\Codexhome\\Bioinformatics\\lga_research_2026\\project\\work\\positive_exome_validation\\bams\\NA18949.bam",
      "slice_bytes": 2926699,
      "slice_sha256": "5b3016da51f8d65078968a31151647e87483919308a64c326cfb9cdc9594f7c4",
      "slice_records": 39249,
      "slice_records_by_gene": {
        "BRCA1": 19630,
        "BRCA2": 19619
      },
      "evidence_json": "E:\\Geneseeq Dropbox\\Yang Shao\\Personal\\Codexhome\\Bioinformatics\\lga_research_2026\\project\\work\\positive_exome_validation\\evidence\\NA18949.evidence.json",
      "qc": {
        "records": 39249,
        "used": 37940,
        "duplicates": 1212,
        "low_mapq": 37,
        "off_target": 3,
        "mean_target_depth": 121.1,
        "median_target_depth": 109.8,
        "depth_cv": 0.4911,
        "insert_mean": 253.8,
        "insert_sd": 103.3,
        "q30_fraction": 0.8732,
        "records_without_usable_qualities": 0,
        "n_het_sites": 8,
        "on_target_fraction": 0.9999
      },
      "conservative_policy": {
        "status": "PASS",
        "matching_calls": [
          {
            "label": "BRCA1 ex15-16",
            "tier": "REVIEW",
            "reportable": false,
            "mean_log2": -1.0306,
            "min_abs_z": 8.05,
            "max_abs_z": 12.36,
            "score": 0.9964,
            "familywise_p_value": 0.010416666666666666,
            "corroboration": "",
            "soft_filters": [
              "no_orthogonal_support",
              "extrapolated_pvalue"
            ],
            "call_target_ids": [
              "BRCA1_E14",
              "BRCA1_E15"
            ],
            "full_truth_hits": 2,
            "full_truth_total": 2,
            "full_truth_recall": 1.0,
            "callable_truth_hits": 2,
            "callable_truth_total": 2,
            "callable_truth_recall": 1.0,
            "callable_truth_exact": true,
            "callable_truth_at_least_80pct": true
          }
        ],
        "any_matching_candidate": true,
        "any_80pct_callable_match": true,
        "any_exact_callable_match": true,
        "any_reportable_match": false
      },
      "depth_only_research_policy": {
        "enabled_switch": "allow_depth_only_corroboration=true",
        "matching_calls": [
          {
            "label": "BRCA1 ex15-16",
            "tier": "PASS",
            "reportable": true,
            "mean_log2": -1.0306,
            "min_abs_z": 8.05,
            "max_abs_z": 12.36,
            "score": 0.9964,
            "familywise_p_value": 0.010416666666666666,
            "corroboration": "2 consecutive exons at |z| >= 8.0 with two observed neutral flanks",
            "soft_filters": [
              "no_orthogonal_support",
              "extrapolated_pvalue"
            ],
            "call_target_ids": [
              "BRCA1_E14",
              "BRCA1_E15"
            ],
            "full_truth_hits": 2,
            "full_truth_total": 2,
            "full_truth_recall": 1.0,
            "callable_truth_hits": 2,
            "callable_truth_total": 2,
            "callable_truth_recall": 1.0,
            "callable_truth_exact": true,
            "callable_truth_at_least_80pct": true
          }
        ],
        "any_reportable_match": true
      }
    },
    {
      "sample": "HG01528",
      "truth": {
        "gene": "BRCA1",
        "kind": "DEL",
        "canonical_exons": [
          1,
          2,
          3,
          4,
          5,
          6
        ],
        "target_ids": [
          "BRCA1_E01",
          "BRCA1_E02",
          "BRCA1_E03",
          "BRCA1_E04",
          "BRCA1_E05",
          "BRCA1_E06"
        ],
        "grch37_event": null,
        "grch38_event": "HGSV_62185/HGSV_217000; chr17:43102678-43183624"
      },
      "full_truth_target_ids": [
        "BRCA1_E01",
        "BRCA1_E02",
        "BRCA1_E03",
        "BRCA1_E04",
        "BRCA1_E05",
        "BRCA1_E06"
      ],
      "callable_truth_target_ids": [
        "BRCA1_E02",
        "BRCA1_E03",
        "BRCA1_E04",
        "BRCA1_E05",
        "BRCA1_E06"
      ],
      "uncallable_truth_target_ids": [
        "BRCA1_E01"
      ],
      "source_bam_url": "https://1000genomes.s3.amazonaws.com/phase3/data/HG01528/exome_alignment/HG01528.mapped.ILLUMINA.bwa.IBS.exome.20121211.bam",
      "source_bai_url": "https://1000genomes.s3.amazonaws.com/phase3/data/HG01528/exome_alignment/HG01528.mapped.ILLUMINA.bwa.IBS.exome.20121211.bam.bai",
      "slice_bam": "E:\\Geneseeq Dropbox\\Yang Shao\\Personal\\Codexhome\\Bioinformatics\\lga_research_2026\\project\\work\\positive_exome_validation\\bams\\HG01528.bam",
      "slice_bytes": 3124870,
      "slice_sha256": "7b74d01de00158bff9638c6b017d83838e4b8c3b39399908b1374dd436afa714",
      "slice_records": 42968,
      "slice_records_by_gene": {
        "BRCA1": 20403,
        "BRCA2": 22565
      },
      "evidence_json": "E:\\Geneseeq Dropbox\\Yang Shao\\Personal\\Codexhome\\Bioinformatics\\lga_research_2026\\project\\work\\positive_exome_validation\\evidence\\HG01528.evidence.json",
      "qc": {
        "records": 42968,
        "used": 39409,
        "duplicates": 3390,
        "low_mapq": 23,
        "off_target": 0,
        "mean_target_depth": 132.9,
        "median_target_depth": 119.4,
        "depth_cv": 0.5186,
        "insert_mean": 241.9,
        "insert_sd": 584.8,
        "q30_fraction": 0.78,
        "records_without_usable_qualities": 0,
        "n_het_sites": 20,
        "on_target_fraction": 1.0
      },
      "conservative_policy": {
        "status": "PASS",
        "matching_calls": [
          {
            "label": "BRCA1 ex2-7",
            "tier": "REVIEW",
            "reportable": false,
            "mean_log2": -0.8266,
            "min_abs_z": 3.28,
            "max_abs_z": 8.41,
            "score": 0.865,
            "familywise_p_value": 0.010416666666666666,
            "corroboration": "",
            "soft_filters": [
              "no_orthogonal_support",
              "pseudogene_shadow",
              "gc_extreme",
              "unobserved_boundary",
              "extrapolated_pvalue"
            ],
            "call_target_ids": [
              "BRCA1_E02",
              "BRCA1_E03",
              "BRCA1_E04",
              "BRCA1_E05",
              "BRCA1_E06"
            ],
            "full_truth_hits": 5,
            "full_truth_total": 6,
            "full_truth_recall": 0.8333333333333334,
            "callable_truth_hits": 5,
            "callable_truth_total": 5,
            "callable_truth_recall": 1.0,
            "callable_truth_exact": true,
            "callable_truth_at_least_80pct": true
          },
          {
            "label": "BRCA1 ex2-8",
            "tier": "REVIEW",
            "reportable": false,
            "mean_log2": -0.6981,
            "min_abs_z": 0.56,
            "max_abs_z": 8.41,
            "score": 0.4678,
            "familywise_p_value": 0.010416666666666666,
            "corroboration": "",
            "soft_filters": [
              "breakpoint_orientation_conflict",
              "no_orthogonal_support",
              "pseudogene_shadow",
              "gc_extreme",
              "unobserved_boundary",
              "extrapolated_pvalue"
            ],
            "call_target_ids": [
              "BRCA1_E02",
              "BRCA1_E03",
              "BRCA1_E04",
              "BRCA1_E05",
              "BRCA1_E06",
              "BRCA1_E07"
            ],
            "full_truth_hits": 5,
            "full_truth_total": 6,
            "full_truth_recall": 0.8333333333333334,
            "callable_truth_hits": 5,
            "callable_truth_total": 5,
            "callable_truth_recall": 1.0,
            "callable_truth_exact": false,
            "callable_truth_at_least_80pct": true
          },
          {
            "label": "BRCA1 ex3-7",
            "tier": "REVIEW",
            "reportable": false,
            "mean_log2": -0.9142,
            "min_abs_z": 4.92,
            "max_abs_z": 8.41,
            "score": 0.9764,
            "familywise_p_value": 0.010416666666666666,
            "corroboration": "",
            "soft_filters": [
              "no_orthogonal_support",
              "gc_extreme",
              "extrapolated_pvalue"
            ],
            "call_target_ids": [
              "BRCA1_E03",
              "BRCA1_E04",
              "BRCA1_E05",
              "BRCA1_E06"
            ],
            "full_truth_hits": 4,
            "full_truth_total": 6,
            "full_truth_recall": 0.6666666666666666,
            "callable_truth_hits": 4,
            "callable_truth_total": 5,
            "callable_truth_recall": 0.8,
            "callable_truth_exact": false,
            "callable_truth_at_least_80pct": true
          },
          {
            "label": "BRCA1 ex3-8",
            "tier": "REVIEW",
            "reportable": false,
            "mean_log2": -0.7424,
            "min_abs_z": 0.56,
            "max_abs_z": 8.41,
            "score": 0.6864,
            "familywise_p_value": 0.010416666666666666,
            "corroboration": "",
            "soft_filters": [
              "breakpoint_orientation_conflict",
              "no_orthogonal_support",
              "extrapolated_pvalue"
            ],
            "call_target_ids": [
              "BRCA1_E03",
              "BRCA1_E04",
              "BRCA1_E05",
              "BRCA1_E06",
              "BRCA1_E07"
            ],
            "full_truth_hits": 4,
            "full_truth_total": 6,
            "full_truth_recall": 0.6666666666666666,
            "callable_truth_hits": 4,
            "callable_truth_total": 5,
            "callable_truth_recall": 0.8,
            "callable_truth_exact": false,
            "callable_truth_at_least_80pct": true
          },
          {
            "label": "BRCA1 ex2-6",
            "tier": "REVIEW",
            "reportable": false,
            "mean_log2": -0.809,
            "min_abs_z": 3.28,
            "max_abs_z": 6.55,
            "score": 0.5524,
            "familywise_p_value": 0.010416666666666666,
            "corroboration": "",
            "soft_filters": [
              "no_orthogonal_support",
              "pseudogene_shadow",
              "gc_extreme",
              "soft_boundary",
              "unobserved_boundary",
              "extrapolated_pvalue"
            ],
            "call_target_ids": [
              "BRCA1_E02",
              "BRCA1_E03",
              "BRCA1_E04",
              "BRCA1_E05"
            ],
            "full_truth_hits": 4,
            "full_truth_total": 6,
            "full_truth_recall": 0.6666666666666666,
            "callable_truth_hits": 4,
            "callable_truth_total": 5,
            "callable_truth_recall": 0.8,
            "callable_truth_exact": false,
            "callable_truth_at_least_80pct": true
          },
          {
            "label": "BRCA1 ex5-7",
            "tier": "REVIEW",
            "reportable": false,
            "mean_log2": -0.8918,
            "min_abs_z": 4.92,
            "max_abs_z": 8.41,
            "score": 0.9301,
            "familywise_p_value": 0.010416666666666666,
            "corroboration": "",
            "soft_filters": [
              "no_orthogonal_support",
              "gc_extreme",
              "soft_boundary",
              "extrapolated_pvalue"
            ],
            "call_target_ids": [
              "BRCA1_E04",
              "BRCA1_E05",
              "BRCA1_E06"
            ],
            "full_truth_hits": 3,
            "full_truth_total": 6,
            "full_truth_recall": 0.5,
            "callable_truth_hits": 3,
            "callable_truth_total": 5,
            "callable_truth_recall": 0.6,
            "callable_truth_exact": false,
            "callable_truth_at_least_80pct": false
          },
          {
            "label": "BRCA1 ex3-6",
            "tier": "REVIEW",
            "reportable": false,
            "mean_log2": -0.9198,
            "min_abs_z": 4.92,
            "max_abs_z": 6.55,
            "score": 0.9186,
            "familywise_p_value": 0.010416666666666666,
            "corroboration": "",
            "soft_filters": [
              "no_orthogonal_support",
              "soft_boundary",
              "extrapolated_pvalue"
            ],
            "call_target_ids": [
              "BRCA1_E03",
              "BRCA1_E04",
              "BRCA1_E05"
            ],
            "full_truth_hits": 3,
            "full_truth_total": 6,
            "full_truth_recall": 0.5,
            "callable_truth_hits": 3,
            "callable_truth_total": 5,
            "callable_truth_recall": 0.6,
            "callable_truth_exact": false,
            "callable_truth_at_least_80pct": false
          },
          {
            "label": "BRCA1 ex5-8",
            "tier": "REVIEW",
            "reportable": false,
            "mean_log2": -0.6828,
            "min_abs_z": 0.56,
            "max_abs_z": 8.41,
            "score": 0.501,
            "familywise_p_value": 0.010416666666666666,
            "corroboration": "",
            "soft_filters": [
              "breakpoint_orientation_conflict",
              "no_orthogonal_support",
              "extrapolated_pvalue"
            ],
            "call_target_ids": [
              "BRCA1_E04",
              "BRCA1_E05",
              "BRCA1_E06",
              "BRCA1_E07"
            ],
            "full_truth_hits": 3,
            "full_truth_total": 6,
            "full_truth_recall": 0.5,
            "callable_truth_hits": 3,
            "callable_truth_total": 5,
            "callable_truth_recall": 0.6,
            "callable_truth_exact": false,
            "callable_truth_at_least_80pct": false
          },
          {
            "label": "BRCA1 ex2-5",
            "tier": "REVIEW",
            "reportable": false,
            "mean_log2": -0.7565,
            "min_abs_z": 3.28,
            "max_abs_z": 6.41,
            "score": 0.3716,
            "familywise_p_value": 0.010416666666666666,
            "corroboration": "",
            "soft_filters": [
              "no_orthogonal_support",
              "pseudogene_shadow",
              "gc_extreme",
              "unobserved_boundary",
              "extrapolated_pvalue"
            ],
            "call_target_ids": [
              "BRCA1_E02",
              "BRCA1_E03",
              "BRCA1_E04"
            ],
            "full_truth_hits": 3,
            "full_truth_total": 6,
            "full_truth_recall": 0.5,
            "callable_truth_hits": 3,
            "callable_truth_total": 5,
            "callable_truth_recall": 0.6,
            "callable_truth_exact": false,
            "callable_truth_at_least_80pct": false
          },
          {
            "label": "BRCA1 ex6-7",
            "tier": "REVIEW",
            "reportable": false,
            "mean_log2": -0.9319,
            "min_abs_z": 6.55,
            "max_abs_z": 8.41,
            "score": 0.9379,
            "familywise_p_value": 0.010416666666666666,
            "corroboration": "",
            "soft_filters": [
              "no_orthogonal_support",
              "gc_extreme",
              "soft_boundary",
              "extrapolated_pvalue"
            ],
            "call_target_ids": [
              "BRCA1_E05",
              "BRCA1_E06"
            ],
            "full_truth_hits": 2,
            "full_truth_total": 6,
            "full_truth_recall": 0.3333333333333333,
            "callable_truth_hits": 2,
            "callable_truth_total": 5,
            "callable_truth_recall": 0.4,
            "callable_truth_exact": false,
            "callable_truth_at_least_80pct": false
          },
          {
            "label": "BRCA1 ex3-5",
            "tier": "REVIEW",
            "reportable": false,
            "mean_log2": -0.8965,
            "min_abs_z": 4.92,
            "max_abs_z": 6.41,
            "score": 0.8288,
            "familywise_p_value": 0.010416666666666666,
            "corroboration": "",
            "soft_filters": [
              "no_orthogonal_support",
              "gc_extreme",
              "soft_boundary",
              "extrapolated_pvalue"
            ],
            "call_target_ids": [
              "BRCA1_E03",
              "BRCA1_E04"
            ],
            "full_truth_hits": 2,
            "full_truth_total": 6,
            "full_truth_recall": 0.3333333333333333,
            "callable_truth_hits": 2,
            "callable_truth_total": 5,
            "callable_truth_recall": 0.4,
            "callable_truth_exact": false,
            "callable_truth_at_least_80pct": false
          },
          {
            "label": "BRCA1 ex5-6",
            "tier": "REVIEW",
            "reportable": false,
            "mean_log2": -0.889,
            "min_abs_z": 4.92,
            "max_abs_z": 6.55,
            "score": 0.8164,
            "familywise_p_value": 0.010416666666666666,
            "corroboration": "",
            "soft_filters": [
              "no_orthogonal_support",
              "gc_extreme",
              "soft_boundary",
              "extrapolated_pvalue"
            ],
            "call_target_ids": [
              "BRCA1_E04",
              "BRCA1_E05"
            ],
            "full_truth_hits": 2,
            "full_truth_total": 6,
            "full_truth_recall": 0.3333333333333333,
            "callable_truth_hits": 2,
            "callable_truth_total": 5,
            "callable_truth_recall": 0.4,
            "callable_truth_exact": false,
            "callable_truth_at_least_80pct": false
          },
          {
            "label": "BRCA1 ex6-8",
            "tier": "REJECT",
            "reportable": false,
            "mean_log2": -0.6398,
            "min_abs_z": 0.56,
            "max_abs_z": 8.41,
            "score": 0.2894,
            "familywise_p_value": 0.19791666666666666,
            "corroboration": "",
            "soft_filters": [
              "breakpoint_orientation_conflict",
              "no_orthogonal_support",
              "extrapolated_pvalue"
            ],
            "call_target_ids": [
              "BRCA1_E05",
              "BRCA1_E06",
              "BRCA1_E07"
            ],
            "full_truth_hits": 2,
            "full_truth_total": 6,
            "full_truth_recall": 0.3333333333333333,
            "callable_truth_hits": 2,
            "callable_truth_total": 5,
            "callable_truth_recall": 0.4,
            "callable_truth_exact": false,
            "callable_truth_at_least_80pct": false
          },
          {
            "label": "BRCA1 ex2-3",
            "tier": "REJECT",
            "reportable": false,
            "mean_log2": -0.7289,
            "min_abs_z": 3.28,
            "max_abs_z": 6.41,
            "score": 0.0411,
            "familywise_p_value": 0.0625,
            "corroboration": "",
            "soft_filters": [
              "no_orthogonal_support",
              "pseudogene_shadow",
              "gc_extreme",
              "soft_boundary",
              "unobserved_boundary"
            ],
            "call_target_ids": [
              "BRCA1_E02",
              "BRCA1_E03"
            ],
            "full_truth_hits": 2,
            "full_truth_total": 6,
            "full_truth_recall": 0.3333333333333333,
            "callable_truth_hits": 2,
            "callable_truth_total": 5,
            "callable_truth_recall": 0.4,
            "callable_truth_exact": false,
            "callable_truth_at_least_80pct": false
          }
        ],
        "any_matching_candidate": true,
        "any_80pct_callable_match": true,
        "any_exact_callable_match": true,
        "any_reportable_match": false
      },
      "depth_only_research_policy": {
        "enabled_switch": "allow_depth_only_corroboration=true",
        "matching_calls": [
          {
            "label": "BRCA1 ex2-7",
            "tier": "REVIEW",
            "reportable": false,
            "mean_log2": -0.8266,
            "min_abs_z": 3.28,
            "max_abs_z": 8.41,
            "score": 0.865,
            "familywise_p_value": 0.010416666666666666,
            "corroboration": "",
            "soft_filters": [
              "no_orthogonal_support",
              "pseudogene_shadow",
              "gc_extreme",
              "unobserved_boundary",
              "extrapolated_pvalue"
            ],
            "call_target_ids": [
              "BRCA1_E02",
              "BRCA1_E03",
              "BRCA1_E04",
              "BRCA1_E05",
              "BRCA1_E06"
            ],
            "full_truth_hits": 5,
            "full_truth_total": 6,
            "full_truth_recall": 0.8333333333333334,
            "callable_truth_hits": 5,
            "callable_truth_total": 5,
            "callable_truth_recall": 1.0,
            "callable_truth_exact": true,
            "callable_truth_at_least_80pct": true
          },
          {
            "label": "BRCA1 ex2-8",
            "tier": "REVIEW",
            "reportable": false,
            "mean_log2": -0.6981,
            "min_abs_z": 0.56,
            "max_abs_z": 8.41,
            "score": 0.4678,
            "familywise_p_value": 0.010416666666666666,
            "corroboration": "",
            "soft_filters": [
              "breakpoint_orientation_conflict",
              "no_orthogonal_support",
              "pseudogene_shadow",
              "gc_extreme",
              "unobserved_boundary",
              "extrapolated_pvalue"
            ],
            "call_target_ids": [
              "BRCA1_E02",
              "BRCA1_E03",
              "BRCA1_E04",
              "BRCA1_E05",
              "BRCA1_E06",
              "BRCA1_E07"
            ],
            "full_truth_hits": 5,
            "full_truth_total": 6,
            "full_truth_recall": 0.8333333333333334,
            "callable_truth_hits": 5,
            "callable_truth_total": 5,
            "callable_truth_recall": 1.0,
            "callable_truth_exact": false,
            "callable_truth_at_least_80pct": true
          },
          {
            "label": "BRCA1 ex3-7",
            "tier": "PASS",
            "reportable": true,
            "mean_log2": -0.9142,
            "min_abs_z": 4.92,
            "max_abs_z": 8.41,
            "score": 0.9764,
            "familywise_p_value": 0.010416666666666666,
            "corroboration": "4 consecutive exons at |z| >= 4.9 with two observed neutral flanks",
            "soft_filters": [
              "no_orthogonal_support",
              "gc_extreme",
              "extrapolated_pvalue"
            ],
            "call_target_ids": [
              "BRCA1_E03",
              "BRCA1_E04",
              "BRCA1_E05",
              "BRCA1_E06"
            ],
            "full_truth_hits": 4,
            "full_truth_total": 6,
            "full_truth_recall": 0.6666666666666666,
            "callable_truth_hits": 4,
            "callable_truth_total": 5,
            "callable_truth_recall": 0.8,
            "callable_truth_exact": false,
            "callable_truth_at_least_80pct": true
          },
          {
            "label": "BRCA1 ex3-8",
            "tier": "REVIEW",
            "reportable": false,
            "mean_log2": -0.7424,
            "min_abs_z": 0.56,
            "max_abs_z": 8.41,
            "score": 0.6864,
            "familywise_p_value": 0.010416666666666666,
            "corroboration": "",
            "soft_filters": [
              "breakpoint_orientation_conflict",
              "no_orthogonal_support",
              "extrapolated_pvalue"
            ],
            "call_target_ids": [
              "BRCA1_E03",
              "BRCA1_E04",
              "BRCA1_E05",
              "BRCA1_E06",
              "BRCA1_E07"
            ],
            "full_truth_hits": 4,
            "full_truth_total": 6,
            "full_truth_recall": 0.6666666666666666,
            "callable_truth_hits": 4,
            "callable_truth_total": 5,
            "callable_truth_recall": 0.8,
            "callable_truth_exact": false,
            "callable_truth_at_least_80pct": true
          },
          {
            "label": "BRCA1 ex2-6",
            "tier": "REVIEW",
            "reportable": false,
            "mean_log2": -0.809,
            "min_abs_z": 3.28,
            "max_abs_z": 6.55,
            "score": 0.5524,
            "familywise_p_value": 0.010416666666666666,
            "corroboration": "",
            "soft_filters": [
              "no_orthogonal_support",
              "pseudogene_shadow",
              "gc_extreme",
              "soft_boundary",
              "unobserved_boundary",
              "extrapolated_pvalue"
            ],
            "call_target_ids": [
              "BRCA1_E02",
              "BRCA1_E03",
              "BRCA1_E04",
              "BRCA1_E05"
            ],
            "full_truth_hits": 4,
            "full_truth_total": 6,
            "full_truth_recall": 0.6666666666666666,
            "callable_truth_hits": 4,
            "callable_truth_total": 5,
            "callable_truth_recall": 0.8,
            "callable_truth_exact": false,
            "callable_truth_at_least_80pct": true
          },
          {
            "label": "BRCA1 ex5-7",
            "tier": "REVIEW",
            "reportable": false,
            "mean_log2": -0.8918,
            "min_abs_z": 4.92,
            "max_abs_z": 8.41,
            "score": 0.9301,
            "familywise_p_value": 0.010416666666666666,
            "corroboration": "",
            "soft_filters": [
              "no_orthogonal_support",
              "gc_extreme",
              "soft_boundary",
              "extrapolated_pvalue"
            ],
            "call_target_ids": [
              "BRCA1_E04",
              "BRCA1_E05",
              "BRCA1_E06"
            ],
            "full_truth_hits": 3,
            "full_truth_total": 6,
            "full_truth_recall": 0.5,
            "callable_truth_hits": 3,
            "callable_truth_total": 5,
            "callable_truth_recall": 0.6,
            "callable_truth_exact": false,
            "callable_truth_at_least_80pct": false
          },
          {
            "label": "BRCA1 ex3-6",
            "tier": "REVIEW",
            "reportable": false,
            "mean_log2": -0.9198,
            "min_abs_z": 4.92,
            "max_abs_z": 6.55,
            "score": 0.9186,
            "familywise_p_value": 0.010416666666666666,
            "corroboration": "",
            "soft_filters": [
              "no_orthogonal_support",
              "soft_boundary",
              "extrapolated_pvalue"
            ],
            "call_target_ids": [
              "BRCA1_E03",
              "BRCA1_E04",
              "BRCA1_E05"
            ],
            "full_truth_hits": 3,
            "full_truth_total": 6,
            "full_truth_recall": 0.5,
            "callable_truth_hits": 3,
            "callable_truth_total": 5,
            "callable_truth_recall": 0.6,
            "callable_truth_exact": false,
            "callable_truth_at_least_80pct": false
          },
          {
            "label": "BRCA1 ex5-8",
            "tier": "REVIEW",
            "reportable": false,
            "mean_log2": -0.6828,
            "min_abs_z": 0.56,
            "max_abs_z": 8.41,
            "score": 0.501,
            "familywise_p_value": 0.010416666666666666,
            "corroboration": "",
            "soft_filters": [
              "breakpoint_orientation_conflict",
              "no_orthogonal_support",
              "extrapolated_pvalue"
            ],
            "call_target_ids": [
              "BRCA1_E04",
              "BRCA1_E05",
              "BRCA1_E06",
              "BRCA1_E07"
            ],
            "full_truth_hits": 3,
            "full_truth_total": 6,
            "full_truth_recall": 0.5,
            "callable_truth_hits": 3,
            "callable_truth_total": 5,
            "callable_truth_recall": 0.6,
            "callable_truth_exact": false,
            "callable_truth_at_least_80pct": false
          },
          {
            "label": "BRCA1 ex2-5",
            "tier": "REVIEW",
            "reportable": false,
            "mean_log2": -0.7565,
            "min_abs_z": 3.28,
            "max_abs_z": 6.41,
            "score": 0.3716,
            "familywise_p_value": 0.010416666666666666,
            "corroboration": "",
            "soft_filters": [
              "no_orthogonal_support",
              "pseudogene_shadow",
              "gc_extreme",
              "unobserved_boundary",
              "extrapolated_pvalue"
            ],
            "call_target_ids": [
              "BRCA1_E02",
              "BRCA1_E03",
              "BRCA1_E04"
            ],
            "full_truth_hits": 3,
            "full_truth_total": 6,
            "full_truth_recall": 0.5,
            "callable_truth_hits": 3,
            "callable_truth_total": 5,
            "callable_truth_recall": 0.6,
            "callable_truth_exact": false,
            "callable_truth_at_least_80pct": false
          },
          {
            "label": "BRCA1 ex6-7",
            "tier": "REVIEW",
            "reportable": false,
            "mean_log2": -0.9319,
            "min_abs_z": 6.55,
            "max_abs_z": 8.41,
            "score": 0.9379,
            "familywise_p_value": 0.010416666666666666,
            "corroboration": "",
            "soft_filters": [
              "no_orthogonal_support",
              "gc_extreme",
              "soft_boundary",
              "extrapolated_pvalue"
            ],
            "call_target_ids": [
              "BRCA1_E05",
              "BRCA1_E06"
            ],
            "full_truth_hits": 2,
            "full_truth_total": 6,
            "full_truth_recall": 0.3333333333333333,
            "callable_truth_hits": 2,
            "callable_truth_total": 5,
            "callable_truth_recall": 0.4,
            "callable_truth_exact": false,
            "callable_truth_at_least_80pct": false
          },
          {
            "label": "BRCA1 ex3-5",
            "tier": "REVIEW",
            "reportable": false,
            "mean_log2": -0.8965,
            "min_abs_z": 4.92,
            "max_abs_z": 6.41,
            "score": 0.8288,
            "familywise_p_value": 0.010416666666666666,
            "corroboration": "",
            "soft_filters": [
              "no_orthogonal_support",
              "gc_extreme",
              "soft_boundary",
              "extrapolated_pvalue"
            ],
            "call_target_ids": [
              "BRCA1_E03",
              "BRCA1_E04"
            ],
            "full_truth_hits": 2,
            "full_truth_total": 6,
            "full_truth_recall": 0.3333333333333333,
            "callable_truth_hits": 2,
            "callable_truth_total": 5,
            "callable_truth_recall": 0.4,
            "callable_truth_exact": false,
            "callable_truth_at_least_80pct": false
          },
          {
            "label": "BRCA1 ex5-6",
            "tier": "REVIEW",
            "reportable": false,
            "mean_log2": -0.889,
            "min_abs_z": 4.92,
            "max_abs_z": 6.55,
            "score": 0.8164,
            "familywise_p_value": 0.010416666666666666,
            "corroboration": "",
            "soft_filters": [
              "no_orthogonal_support",
              "gc_extreme",
              "soft_boundary",
              "extrapolated_pvalue"
            ],
            "call_target_ids": [
              "BRCA1_E04",
              "BRCA1_E05"
            ],
            "full_truth_hits": 2,
            "full_truth_total": 6,
            "full_truth_recall": 0.3333333333333333,
            "callable_truth_hits": 2,
            "callable_truth_total": 5,
            "callable_truth_recall": 0.4,
            "callable_truth_exact": false,
            "callable_truth_at_least_80pct": false
          },
          {
            "label": "BRCA1 ex6-8",
            "tier": "REJECT",
            "reportable": false,
            "mean_log2": -0.6398,
            "min_abs_z": 0.56,
            "max_abs_z": 8.41,
            "score": 0.2894,
            "familywise_p_value": 0.19791666666666666,
            "corroboration": "",
            "soft_filters": [
              "breakpoint_orientation_conflict",
              "no_orthogonal_support",
              "extrapolated_pvalue"
            ],
            "call_target_ids": [
              "BRCA1_E05",
              "BRCA1_E06",
              "BRCA1_E07"
            ],
            "full_truth_hits": 2,
            "full_truth_total": 6,
            "full_truth_recall": 0.3333333333333333,
            "callable_truth_hits": 2,
            "callable_truth_total": 5,
            "callable_truth_recall": 0.4,
            "callable_truth_exact": false,
            "callable_truth_at_least_80pct": false
          },
          {
            "label": "BRCA1 ex2-3",
            "tier": "REJECT",
            "reportable": false,
            "mean_log2": -0.7289,
            "min_abs_z": 3.28,
            "max_abs_z": 6.41,
            "score": 0.0411,
            "familywise_p_value": 0.0625,
            "corroboration": "",
            "soft_filters": [
              "no_orthogonal_support",
              "pseudogene_shadow",
              "gc_extreme",
              "soft_boundary",
              "unobserved_boundary"
            ],
            "call_target_ids": [
              "BRCA1_E02",
              "BRCA1_E03"
            ],
            "full_truth_hits": 2,
            "full_truth_total": 6,
            "full_truth_recall": 0.3333333333333333,
            "callable_truth_hits": 2,
            "callable_truth_total": 5,
            "callable_truth_recall": 0.4,
            "callable_truth_exact": false,
            "callable_truth_at_least_80pct": false
          }
        ],
        "any_reportable_match": true
      }
    }
  ]
}
